Evolutionary Developmental Model for the Origin of the Turtle Shell
“Results of a phylogenetic analysis of shelled reptiles and characters important in constructing a shell are plotted against the ontogeny of pleurodire turtles. Thin sections through turtle embryos show the initial outgrowth of (sub)dermal bone through the costals first (carapace length [CL] = 13.0mm in the pleurodire Emydura subglobosa) and then the neurals (CL = 18.0 mm in the pleurodire Pelomedusa subrufa). The timing of ontogenetic transformations of those features (in red) important in the construction of the shell (i.e., the number of dorsal vertebrae or ribs does not change through ontogeny) is congruent with the phylogenetic transformation of those same features based on our recovered tree topology. Our model makes explicit morphological and histological predictions for the lineage prior to the most recent common ancestor of Eunotosaurus africanus and turtles that are met by the morphology found in Milleretta rubidgei. Numbers above each node represent bootstrap frequencies obtained in the phylogenetic analysis.”
See also:
Salamander DNA reveals evidence of older land connection between Central and South America
by Smithsonian staff
The two continents are generally believed to have been joined together around three million years ago by the formation of a land bridge–what is now Panama–that sealed up the sea channel between them.
However, a new study of salamanders in South America by a research team lead by Kathryn Elmer of the University of Glasgow, has found evidence that challenges these assumptions and supports a controversial claim by Carlos Jaramillo, a paleontologist at the Smithsonian Tropical Research Institute in Panama, that most of the Isthmus of Panama was formed around 23 million years ago.
The fusion of both land masses led to a two-way migration of animals called the ‘Great American Biotic Interchange’, where animals that had previously evolved separately moved between the two continents, increasing the biodiversity in both regions.
The relative dearth of species of salamander in South America–around 30–compared to Central America, where there are more than 300 species, is usually attributed to the relatively short time the tiny amphibians have had to make their way south down the Isthmus of Panama–a thin strip of land only 30 miles wide at its narrowest point.
However, using DNA analysis, Elmer found that salamanders in South America had much greater genetic divergence from their Central American cousins than should be expected if salamanders migrated across a three- million-year-old land bridge…
(read more: Smithsonian Science)
(photos: T - Bolitoglossa sp. in the upper Amazon basin by Santiago Ron; B - B. peruviana by Kristiina Ovaska)
source: Carlos Jaramillo - Univ. of Glasgow
A rock hyrax, whose closest living relative is the African elephant. (Wild Arabia - BBC)
(via theanimalblog)
The Juvenile Hoatzin (Opisthocomus hoazin)
It should first be noted that all birds are dinosaurs (order Saurischia, clade Theropoda), not just descendents of dinosaurs - modern genetic analysis strongly supports this cladistic organization. But given what we’re too often taught in schools, birds and dinosaurs are hard to reconcile in many peoples’ minds.
The juvenile hoatzin, however, makes it easy to see the reptilian traits that once dominated the early birds, and displays the unused genetic codes that lurk in the genome of modern avians. When they hatch, they’re equipped with lizard-like claws in front of their wings. Their use is described here, but in short, they use them to return to their nest and avoid predators. Their claws disappear by the time they leave the nest, having grown together into the metacarpals that support the wing structure.
Another fascinating trait of the hoatzins is their vegetarianism and their digestive tract. They have gut flora and fermentation similar to ruminants, which no other bird has. This is actually what leads to their being called “stink birds” - they exude a lot of stench with the fermentation process. The gut fermentation is so important to the hoatzin that the flight muscles attached to their keel are significantly reduced, to allow for more space for the stomach. They are weak flyers because of this. After a large meal, an adult hoatzin can spend up to two days doing almost nothing, allowing the leaves and greenery to have their nutrients released by their symbiotic gut flora.
Images:
Top: Attitudes of the juvenile hoatzin while climbing
Second row, left: Hoatzin nest with two eggs - Note proximity to water
Second row, right: Two hoatzin chicks preparing to dive, after appearance of threat from above
Third row, left: Hoatzin chick demonstrating strong swimming abilities
Third row, right: Hoatzin chick demonstrating poor locomotion on land
Bottom: Detail of hoatzin chick climbing, using neck, feet, and claws.Tropical Wild Life in British Guinea, Vol 1. Curated by William Beebe, 1898.
It should be noted that the claws of Hoatzin are not actually simply because they are related to dinosaurs. Their claws actually re-evolved independently - they are not evolutionary leftovers at their core. While it could be considered a re-appearing gene because of their evolutionary history, it’s still something that would have to be selected over time and could have vanished again just as easily, not to mention it’s very unlikely (and impossible to prove) that it is the exact genome coming out of dormancy.
It’s more similar to dinosaurs when one thinks about convergent evolution than when one thinks about descendence, even if they are descendents too.
All of this is true, but I still like the hoatzin as an example of how to start to show people how birds really *are* dinosaurs - it’s a concept that many people don’t even begin to accept easily.
Hoatzin claws aren’t so much elongated talons-turned-wings like the Archaeopteryx seems to have, as they are a set of hooks on the front of a “chicken wing” structure. Note too, that Archaeopteryx and the hoatzin are not closely related at all (also the archaeopteryx may not even be a bird or bird relative/ancestor, but that’s a whole different matter).
Either way, the hoatzin (btw, if anyone’s wondering, that’s basically pronounced “Watsin”) is an interesting bird. The morphological changes in the wing bones as it matures are interesting enough, but the fact that it’s got such a weird digestive system are what really intrigue me.
It should be noted that while the hoatzin is a poor flyer, it’s not because it’s “primitive” or anything - it’s completely because they have a huge gut, and smaller flight muscles because of that. While their gut is a characteristic that some pretty ancient ancestors of theirs had (at least back to the Eocene), the species as a whole isn’t some evolutionary throwback, like some of the Crocodilians. The “hook-hands” of the hoatzin are relatively recent developments, as was noted. But their morphological similarities to the extinct Therapods still helps to remind people that dinosaurs and birds aren’t so different, after all.
(via queensimia)
Excellent short article, highly recommended!
Why Do Grandmothers Exist?
BY JUDITH SHULEVITZ (in the New Republic)
“A phylogenetic blueprint for a modern whale (Balaenoptera musculus). The topology traces the inferred evolutionary history of an extant cetacean based on results summarized in Figs. 7–9 and Table 1. Changes extend back to the base of Artiodactyla (A–D). The long sequence of character transformations on the stem lineage to crown Cetacea (branches E–O), on the stem lineage to crown Mysticeti (branches a–f), and within crown Mysticeti (branches g–h) has culminated in the extant blue whale. A subset of the changes on these internal branches (Table 1) are marked by colored circles that indicate the internode where each character evolved and, when applicable, the approximate anatomical position of each derived character state (delayed transformation optimization): B-1 = three primary lung bronchi and multi-chambered stomach, B-2 = fibro-elastic penis with sparse cavernous tissue, C-1 = sparse hair, sebaceous glands absent, and transition to freshwater, C-2 = scrotum absent, can give birth underwater, and can nurse underwater, D = involucrum (thickening of medial wall of auditory bulla), E = robust tail, F–G = transition to saltwater, G = incisive foramina absent and vomeronasal organ inferred absent, H = short cervical (neck) vertebrae, K = posterior positioning of nasal aperture, L = no articulation between vertebrae and pelvis (sacroiliac joint absent), M1 = very short hindlimbs, M2 = tail flukes inferred present, O-1 = external ears absent, O-2 = immobile elbow joint, O-3 = sweat glands absent, a = broad rostrum, b = thin lateral margins of maxillae, c-1 = lateral nutrient foramina on palate and baleen inferred present, c-2 = unsutured mandibular symphysis, d = no teeth in adults, e-1 = telescoping of skull (anterior extension of occipital shield), e-2 = bowed mandibles, g-1 = fibrous temporomandibular joint, g-2 = muscle of tongue reduced (predominantly connective tissue) and ventral throat pouch with numerous grooves, h = enormous body size. Branch lengths are not proportional to time. Artwork is by Carl Buell. (For interpretation of the references to color in this figure legend, the reader is referred to the web version of this article.)”
A phylogenetic blueprint for a modern whale. Gatesy J, Geisler JH, Chang J, Buell C, Berta A, Meredith RW, Springer MS, McGowen MR. Mol Phylogenet Evol. 2012 Oct 26. pii: S1055-7903(12)00418-6. doi: 10.1016/j.ympev.2012.10.012. (pdf)
Prehistoric whale evolution, illustrated by Tiffany Turrill.
Ambulocetus, my sweet baby
(via scientificillustration)
Water-Wrinkled Fingers Hold Evolutionary Purpose
Wrinkly fingers caused by soaking them in water for a long time, such as in the bath or doing the dishes, have been shown to improve our grip on wet objects or objects under water. Scientists at Newcastle Univ. studied people taking objects out of water with wrinkled fingers and again without wrinkled fingers to explain why the effect occurs.
Author Tom Smulders, publishing the paper in Biology Letters says, “We have shown that wrinkled fingers give a better grip in wet conditions – it could be working like treads on your car tires which allow more of the tire to be in contact with the road and gives you a better grip. Going back in time this wrinkling of our fingers in wet conditions could have helped with gathering food from wet vegetation or streams. And as we see the effect in our toes too, this may have been an advantage as it may have meant our ancestors were able to get a better footing in the rain.”
Read more: http://www.laboratoryequipment.com/news/2013/01/water-wrinkled-fingers-hold-evolutionary-purpose
A third [evolutionary] advance is in a way the most important, since it is the one used by paleontologists to distinguish reptiles from mammals. The lower jaw of reptiles contains several bones, of which two are important to us. One of these, the dentary, bears the teeth while the other, the articular, smaller and at the hind end of the jaw, forms part of the hinge between the lower and upper jaw (Figure 9-8). The other part of this hinge is the quadrate, a small bone in the head portion of the skull, or cranium. Immediately behind these two small jaw bones is the middle ear, within which sound waves are amplified and transmitted from a special nerve to the brain. In reptiles, amphibians, and fishes, this amplification is carried out by a single small bone. By contrast, the lower jaw of mammals consists only of the tooth-bearing (dentary) bone, which is hinged to another bone, the squamosal, also in the cranium. The two bones that form the hinge of the reptilian jaw have not disappeared. They are represented in mammals by two small bones in the middle ear connected with the counterpart of the single reptilian ear bone. In reptiles, amplification of sound waves in the middle ear, carried out by a single bone, is relatively inefficient. The three bones in the mammalian ear do this job much more effectively, so that the hearing of mammals is much better than that of reptiles.
In order to classify fossil animals neatly and clearly as either reptiles or mammals, most paleontologists and nearly all textbooks classify as reptiles all bony-limbed animals that have a liquid-filled amniotic egg and a jaw hinge formed by the two small bones, articular and quadrate, along with a single ear bone. Mammals differ in having the tooth-bearing (dentary) lower jaw bone articulated directly with a bone of the cranium (squamosal), plus three small bones in the middle ear. Tooth structure also helps in classifying them. Nevertheless, an animal that has almost mammalian teeth but a reptilian jaw hinge and middle ear bone is called a reptile. Mammallike reptiles are all classified as reptiles on the basis of this character, even though the advanced dog-tooth has teeth that resemble those of primitive mammals more than they resemble the teeth of the earliest mammallike reptiles or their immediate ancestors, the pelycosaurs. Likewise, the earliest animals having three bones in the middle ear are called mammals, although, like the primitive mammals of modern Australia—the spiny anteater and platypus (monotremes)—they may well have laid eggs, lacked nipples or teats, had skeletons showing some reptilian features such as shoulder girdles, and had chromosomes resembling those of reptiles.
— Stebbins - Darwin to DNA, Molecules to Humanity, pp. 289-91
I find this strangely profound: everyone knows the difference between a reptile and a mammal upon seeing one, but once all the fragile details are stripped away, there’s only a single, trivial difference between them; it’s this one silly little criterion that informs all of our (taxonomical) knowledge about species long-extinct. I suspect that the taxonomies of many disciplines are like this.
The text alongside fig. 9-8 reads:
Figure 9-8.
A series of skulls showing a few of the numerous transitional forms that, via a series of adaptive radiations, resulted eventually in the origin of modern mammals (a)–(c): Three typical reptiles. (a) A primitive Captorhinus that, like early amphibians and modern turtles, has only one pair of openings in the skull in addition to the nostrils. (b) A primitive ancestor of lizards, Youngina. (c) A modern lizard, Varanus. (d)–(i): Six reptiles that were on or near the line leading to mammals. (d) and (e) Two pelycosaurs that were typical reptiles but show the beginnings of tooth differentiation. Note that the hindmost bone of the lower jaw (angular, a) is nearly as large as the tooth-bearing bone (dentary, dn). (f) and (g) Two early mammallike reptiles, showing further tooth differentiation, plus reduction in size of the angular bone. (h) and (i) Two later forms of reptiles that, with respect to tooth differentiation and reduction of the angular bone, were much like mammals. Diarthrognathus was almost completely intermediate between reptiles and mammals. (j)–(l): Three kinds of mammals. (j) Sinoconodon, the earliest of these, still retained a number of reptilian features. (k) A later form, Deltatheridium, was very similar to modern shrews. (l) A modern opossum (Didelphys). The skulls are drawn at different scales of magnification. Those in the center column are at natural size or somewhat reduced; those in the right column are somewhat magnified.
(via scientificillustration)
Dinosaurs & Their Relatives
So! I’m taking a GE science class that’s about dinosaurs (: We looked at fossils today in lab and talked about what makes a dinosaur a dinosaur in lecture. It was like a flashback to second grade learning about the mesozoic era.. and today my professor said that dinosaurs DO NOT FLY or ARE NOT AQUATIC . :O You learn something new everyday, fancy that. I hope that this class stays interesting and not too difficult.
Tell your professor that dinosaurs do indeed fly. They must have seen birds at some point in their life, right?
Here’s a modern aquatic dinosaur that evolved from flying dinosaurs, just for extra fun times.
(via prehistoric-birds)
_____________________________________________________
Early humans linked to large-carnivore extinctions
Hominins could have triggered broad changes to the numbers and diversity of meat-eaters in Africa, researcher says.
by Jeff Tollefson (26 April 2012)
Animal lovers around the world know modern otters as cute, playful and unthreatening. But the mustelid’s giant cousins in ancient Africa may have engaged in a life-and-death competition with humanity’s ancestors — and come out on the losing end.
The demise of the gigantic ‘bear otter’ (Enhydriodon dikikae) was part of a broader decline in large-carnivore diversity in Africa, which accelerated around 2 million years ago — roughly the time that the first representatives of the genus Homo appeared on the scene. Lars Werdelin, a curator at the Swedish Museum of Natural History in Stockholm has been building a case that our forebears had something to do with the change. Although direct evidence of any causal connection is sorely lacking, Werdelin says, the transition in the carnivore fossil record coincides nicely with advances in tool-making and dietary shifts among early hominins.
“The way I see it, this is one of the first ways in which we manipulated our environment on a large scale,” says Werdelin, who presented his latest findings at a symposium on human evolution and climate change at Columbia University’s Lamont-Doherty Earth Observatory in Palisades, New York. Werdelin argues that hominins may have competed indirectly with some of these carnivores by occupying prime habitat, thus forcing the animals to change their behavior without ever coming into direct contact with them. In some cases, the hominins may have out-competed carnivores directly by forcing them to surrender fresh kills. Regardless, the emergence of early humans could have cascaded through the food chain — ultimately wiping out many of Africa’s larger meat-eaters…
(read more: Nature)
(images via NovaTaxa: TR - Victor Leshyk; B - Cal. Academy of Sci.)
(via scientificillustration)
______________________________________________
Eel-like creature identified as ‘earliest human ancestor’
A prehistoric eel-like creature discovered in a Canadian shale bed has been identified as the earliest known ancestor of man.
by Nick Collins (March, 2012)
Fossils dating back 505 million years preserve the relics of tiny, slithering animals which are the oldest life forms ever discovered with primitive spinal cords.
As the precursor of vertebrates the species is also believed to be the direct ancestor of all members of the chordate family, which includes fish, birds, reptiles, amphibians and mammals.
The finding means the 5cm long creatures, known as Pikaia gracilens, were the forerunners of animals as diverse as snakes, swans and humans, scientists said.
The fossils, preserved in shale beds in Canada, were first found 100 years ago by American paleontologist Charles Doolittle Walcott, who suggested they could have been an early type of leech or worm.
Scientists had since speculated that the creatures could have been chordates because they appeared to have a simple form of notochord, a flexible rod which makes up part of the backbone in vertebrates…
(read more: Telegraph UK) (images: T - Marianne Collins/PA; B - PA)
(via scientificillustration)
Here Is What Some Schoolchildren in Louisiana Learn About Evolution
Fifth graders in some state-sponsored schools in Louisiana study both creationism and evolution as competing theories. “Fact or Theory?”
-source | Buzzfeed
Just a quick glance looks like it favors creationism pretty hard. And with tax payer money.
UGH NO WTF?!
Seriously, this isn’t a science textbook and doesn’t belong anywhere near a science class. It’s religious education (“Dinosaurs and man would have lived at the same time. God is always accurate.”)
Also, it’s actually terribly incorrect in terms of what it presents as “evolutionist viewpoint” - look at that table that claims evolutionists believe taht “Man is the highest form of animal.”
Actually, no. I don’t think you’ll find any evolutionary biologist claiming that man is the “highest form” - that’s a pretty ridiculous claim. A more accurate statement for that table would be “Man is an animal.”
And I hate, loathe, and despise the way creationists do things like call evolution “just a theory” or use similar things (“Fact or Theory?”) We don’t publish textbooks that say “Gravity - Fact or Theory?”
If you can’t disprove it, it doesn’t belong in a science class. Ask creationists what evidence science could provide to disprove creationism, and they’ll say “nothing.” Ask an evolutionary biologist what could be done to disprove evolution, and they’ll tell you that there is evidence you could put forth to disprove it - famously, the “rabbits in the Precambrian” quote. Extraordinary claims would require extraordinary proof, but falsifiability is a key aspect of science - and there’s no evidence that you could ever produce to make a creationist give up on God.
This is one of the things about the American education system that continues to confuse/horrify me. If you want your children to learn about creation nothing forbids you from sending them to catechism/sunday school. But in science class you will learn about motherfrakking science. Hell, we managed this incredible leap of logic in Italy, of all places, and we live next door to the bloody Vatican

Carl Zimmer (2011), Histoires de plumes; Quand les poules avaient des dents, National Geographic France 2011
(via prehistoric-birds)
[PSN] rnc_shiisa


![scientificillustration:
Evolutionary Developmental Model for the Origin of the Turtle Shell
“Results of a phylogenetic analysis of shelled reptiles and characters important in constructing a shell are plotted against the ontogeny of pleurodire turtles. Thin sections through turtle embryos show the initial outgrowth of (sub)dermal bone through the costals first (carapace length [CL] = 13.0mm in the pleurodire Emydura subglobosa) and then the neurals (CL = 18.0 mm in the pleurodire Pelomedusa subrufa). The timing of ontogenetic transformations of those features (in red) important in the construction of the shell (i.e., the number of dorsal vertebrae or ribs does not change through ontogeny) is congruent with the phylogenetic transformation of those same features based on our recovered tree topology. Our model makes explicit morphological and histological predictions for the lineage prior to the most recent common ancestor of Eunotosaurus africanus and turtles that are met by the morphology found in Milleretta rubidgei. Numbers above each node represent bootstrap frequencies obtained in the phylogenetic analysis.”
Evolutionary Origin of the Turtle Shell Lyson, Tyler R.; Bever, Gabe S.; Scheyer, Torsten M.; Hsiang, Allison Y.; Gauthier, Jacques A. Current biology : CB doi:10.1016/j.cub.2013.05.003
See also:
How the turtle got its unique hard shell
http://news.yale.edu/2013/05/30/how-turtle-got-its-shell](http://25.media.tumblr.com/24b34d7dec09b66d36f652d42b041ab2/tumblr_mnq1ebNC3f1qgzqeto1_500.jpg)





![writingcapital:
A third [evolutionary] advance is in a way the most important, since it is the one used by paleontologists to distinguish reptiles from mammals. The lower jaw of reptiles contains several bones, of which two are important to us. One of these, the dentary, bears the teeth while the other, the articular, smaller and at the hind end of the jaw, forms part of the hinge between the lower and upper jaw (Figure 9-8). The other part of this hinge is the quadrate, a small bone in the head portion of the skull, or cranium. Immediately behind these two small jaw bones is the middle ear, within which sound waves are amplified and transmitted from a special nerve to the brain. In reptiles, amphibians, and fishes, this amplification is carried out by a single small bone. By contrast, the lower jaw of mammals consists only of the tooth-bearing (dentary) bone, which is hinged to another bone, the squamosal, also in the cranium. The two bones that form the hinge of the reptilian jaw have not disappeared. They are represented in mammals by two small bones in the middle ear connected with the counterpart of the single reptilian ear bone. In reptiles, amplification of sound waves in the middle ear, carried out by a single bone, is relatively inefficient. The three bones in the mammalian ear do this job much more effectively, so that the hearing of mammals is much better than that of reptiles.
In order to classify fossil animals neatly and clearly as either reptiles or mammals, most paleontologists and nearly all textbooks classify as reptiles all bony-limbed animals that have a liquid-filled amniotic egg and a jaw hinge formed by the two small bones, articular and quadrate, along with a single ear bone. Mammals differ in having the tooth-bearing (dentary) lower jaw bone articulated directly with a bone of the cranium (squamosal), plus three small bones in the middle ear. Tooth structure also helps in classifying them. Nevertheless, an animal that has almost mammalian teeth but a reptilian jaw hinge and middle ear bone is called a reptile. Mammallike reptiles are all classified as reptiles on the basis of this character, even though the advanced dog-tooth has teeth that resemble those of primitive mammals more than they resemble the teeth of the earliest mammallike reptiles or their immediate ancestors, the pelycosaurs. Likewise, the earliest animals having three bones in the middle ear are called mammals, although, like the primitive mammals of modern Australia—the spiny anteater and platypus (monotremes)—they may well have laid eggs, lacked nipples or teats, had skeletons showing some reptilian features such as shoulder girdles, and had chromosomes resembling those of reptiles.
— Stebbins - Darwin to DNA, Molecules to Humanity, pp. 289-91
I find this strangely profound: everyone knows the difference between a reptile and a mammal upon seeing one, but once all the fragile details are stripped away, there’s only a single, trivial difference between them; it’s this one silly little criterion that informs all of our (taxonomical) knowledge about species long-extinct. I suspect that the taxonomies of many disciplines are like this.
The text alongside fig. 9-8 reads:
Figure 9-8.A series of skulls showing a few of the numerous transitional forms that, via a series of adaptive radiations, resulted eventually in the origin of modern mammals (a)–(c): Three typical reptiles. (a) A primitive Captorhinus that, like early amphibians and modern turtles, has only one pair of openings in the skull in addition to the nostrils. (b) A primitive ancestor of lizards, Youngina. (c) A modern lizard, Varanus. (d)–(i): Six reptiles that were on or near the line leading to mammals. (d) and (e) Two pelycosaurs that were typical reptiles but show the beginnings of tooth differentiation. Note that the hindmost bone of the lower jaw (angular, a) is nearly as large as the tooth-bearing bone (dentary, dn). (f) and (g) Two early mammallike reptiles, showing further tooth differentiation, plus reduction in size of the angular bone. (h) and (i) Two later forms of reptiles that, with respect to tooth differentiation and reduction of the angular bone, were much like mammals. Diarthrognathus was almost completely intermediate between reptiles and mammals. (j)–(l): Three kinds of mammals. (j) Sinoconodon, the earliest of these, still retained a number of reptilian features. (k) A later form, Deltatheridium, was very similar to modern shrews. (l) A modern opossum (Didelphys). The skulls are drawn at different scales of magnification. Those in the center column are at natural size or somewhat reduced; those in the right column are somewhat magnified.](http://24.media.tumblr.com/d082b675deefe9f78ed170cfb15a12cd/tumblr_mfetorj2Lp1r8gcifo1_500.jpg)




